Yi Gao

--- Publications

中文版

Journal publications and Chapters in Books

  1. Yi Gao, and Sylvain Bouix, Statistical Shape Analysis using 3D Poisson Equation---A Quantitatively Validated Approach, Medical Image Analysis, accepted
  2. Yi Gao, Wei Chen, Baoyu Liu, Allen Tannenbaum, and Cheng Zhu, T-cell shape variation with intra-cellular Ca2+ concentration: A joint image and shape study, Computer Assisted Surgery, New Developments, Applications And Potential Hazards, 2015.
  3. Asim K. Bag, Hyunki Kim, Yi Gao, Paula P. Warren, Hassan M. Fathallah-Shaykh, James M. Markert, John Fiveash, Timothy M. Beasley, Ayaz Khawaja, Gregory K. Friedman, Phipip R. Chapman, Louis B. Nabors, and Xiaosi Han, Prolonged treatment with bevacizumab is associated with brain atrophy: A pilot study in patients with high-grade gliomas, Journal of Neuro-Oncology, vol. 122, no. 3, pp. 585-593, 2015.
  4. Yi Gao, Liangjia Zhu, Josh Cates, Rob S. MacLeod, Sylvain Bouix, and Allen Tannenbaum, A Kalman filtering perspective for multi-atlas segmentation, SIAM Journal on Imaging Sciences, vol. 8, no. 2, pp. 1007-1029, 2015.
  5. Y. Gao, T. Riklin-Raviv, and S. Bouix, Shape analysis, a field in need of careful validation, Human Brain Mapping, vol. 35, no. 10, pp. 4965-4978, 2014..
  6. T. Raviv, Y. Gao, J. Levitt, and S. Bouix, Statistical shape analysis of neuroanatomical structures via level-set based shape morphing, SIAM Journal on Imaging Sciences, vol. 7, no. 3, pp. 1645-1668, 2014.
  7. L. Zhu, Y. Gao, V. Appia, A. Yezzi, C. Arepalli, T. Faber, A. Stillman, and A. Tannenbaum, A complete system for automatic extraction of left ventricular myocardium from CT images using shape segmentation and contour evolution, IEEE Transactions on Image Processing, vol. 23, no. 3, pp. 1340+12, 2014.
  8. R. Karim, R.J. Housden, M. Balasubramaniam, Z. Chen, D. Perry, A. Uddin, Y. Al-Beyatti, E. Plakhi, P. Acheampong, S. Obom, A. Hennemuth, Y. Lu, W. Bai, W. Shi, Y. Gao, H. Peitgen, P. Radau, R. Razavi, A. Tannenbaum, D. Rueckert, J. Cates, T. Schaeffter, D. Peters, R. MacLeod, and K. Rhode, Evaluation of current algorithms for segmentation of scar tissue from late gadolinium enhancement MR images of the left atrium: an open-access grand challenge, Journal of Cardiovascular Magnetic Resonance, vol. 15, 2013.
  9. Y. Gao, A. Tannenbaum, H. Chen, M.A. Torres, E.J. Yoshida, X. Yang, W.J. Curran, and T. Liu, Automated skin segmentation in ultrasonic evaluation of skin toxicity in breast-cancer radiotherapy, Ultrasound in Medicine and Biology, vol. 39, pp. 2166-75, 2013
  10. Y. Gao, S. Bouix, M. Shenton, and A. Tannenbaum, Sparse texture active contour, IEEE Transactions on Image Processing, vol. 22, no. 10, pp. 3866-78, 2013
  11. L. Zhu, Y. Gao, V. Appia, A. Yezzi, C. Arepalli, T. Faber, A. Stillman, and A. Tannenbaum, Automatic segmentation of the left atrium from MR images via variational region growing with a moments-based shape prior, IEEE Transactions on Image Processing, 2013, Note: in press.
  12. L. Zhu, Y. Gao, V. Appia, A. Yezzi, C. Arepalli, T. Faber, A. Stillman, and A. Tannenbaum, Automatic delineation of the myocardial wall from CT images via shape segmentation and variational region growing, IEEE Transactions on Biomedical Engineering, vol. 60, pp. 2887-95, 2013
  13. Z. Li1 , Y. Gao1 , K.S. Moon, A. Tannenbaum, and C.P. Wong, Automatic quantification of filler dispersion in polymer composites, Polymer, vol. 53, no. 7, pp. 1571-1580, 2012, 1Equal contribution.
  14. Y. Gao, B. Corn, D. Schifter, and A. Tannenbaum, Multiscale 3D shape representation and segmentation with applications to hippocampal/caudate extraction from brain MRI, Medical Image Analysis, vol. 16, no. 2, pp. 374-385, 2012. Source code
  15. Y. Gao, R. Kikinis, S. Bouix, M. Shenton, and A. Tannenbaum, A 3D interactive multi-object segmentation tool using local robust statistics driven active contours, Medical Image Analysis, vol. 16, no. 6, pp. 1216-1227, 2012, The open source software of this paper got more than 30,100 accesses as of 2013.4.10.
  16. Y. Gao1, Z. Li1, Z. Lin, L. Zhu, A. Tannenbaum, S. Bouix, and C.P. Wong, Automated dispersion and orientation analysis for carbon nanotube reinforced polymer composites, Nanotechnology, vol. 23, no. 43, pp. 435706-435715, 2012. 1Equal contribution.
  17. Y. Gao, Y. Rathi, S. Bouix, and A. Tannenbaum, Filtering in the diffeomorphism group and the registration of point sets, IEEE Transactions on Image Processing, vol. 21, no. 10, pp. 4383-4396, 2012.
  18. Y. Gao, R. Sandhu, G. Fichtinger, and A. Tannenbaum, A coupled global registration and segmentation framework with application to magnetic resonance prostate imagery, IEEE Transactions on Medical Imaging, vol. 29, no. 10, pp. 1781-1794, 2010.
  19. Y. Gao, B. Corn, D. Schifter, and A. Tannenbaum, 3D automatic segmentation of the hippocampus using wavelets with applications to radiotherapy planning, Chapter 1, Body and Machine, Springer, Editors J. Angeles and B. Boulet and J.J. Clark and J. Kovecses and K. Siddiqi, 2010.

Contributions to the Open Science

  1. Y. Gao, R. Kikinis, and A. Tannenbaum, Robust statistics automatic 3D image segmentation software, As of 2013.4.10, its tutorial pages: Version 3.6 and Version 4 have over 30,100 total page accesses. This algorithm is one of the main segmentation module of 3D Slicer, a medical image computing software platform.
  2. Y. Gao, D. Nain, X. LeFaucheur, and A. Tannenbaum, Spherical wavelet ITK filter, As of 2012.9.24, this module has 4740 downloads, ranking 6th among all papers in that journal.
  3. Y. Gao, J. Melonakos, and A. Tannenbaum, Conformal flattening ITK filter, part of InsightToolkit (ITK) package, 1476 downloads as of 2012.9.24.
  4. Y. Gao and A. Tannenbaum, Left atrium segmentation tool for MR imagery, part of 3D Slicer package.

Referred Conference Publications

  1. Y. Gao, X.A. Li, K. Fishman, X. Yang, and T. Liu, Semi-automatic segmentation of skin cancer in high-frequency ultrasound images: Initial comparison with histology, in AAPM, 2014, Note: accepted as oral presentation.
  2. Y. Hong, Y. Gao, M. Niethammer, and S. Bouix, Depth-based shape-analysis, in MICCAI, 2014, Note: accepted as oral presentation.
  3. Y. Gao and L. Ver Hoef, Hippocampal surface dentation characteristics through sub-pixel segmentation, in International Society for Magnetic Resonance in Medicine (ISMRM), 2014, Note: oral presentation.
  4. Y. Gao, Successive convex optimization for point set registration, in Proceedings of the International Symposium on Biomedical Imaging (ISBI), 2014.
  5. Y. Gao and S. Bouix, Signed Poisson map for shape analysis, in Proceedings of the International Symposium on Biomedical Imaging (ISBI), 2014.
  6. Y. Gao, D. Nain, X. LeFaucheur, and A. Tannenbaum, Spherical wavelet ITK filter, in MICCAI Workshop on Open Source, Brisbane, Australia/Insight Journal, 2007, The open source software of this paper got 4740 downloads as of 2013.4.10, ranking 6th in all papers in the Insight Journal.
  7. Y. Gao, J. Melonakos, and A. Tannenbaum, Conformal flattening ITK filter, in MICCAI Workshop on Open Source, Copenhagen, Denmark/Insight Journal, 2006, Note: oral presentation, The open source software of this paper got 1476 downloads as of 2013.4.10.
  8. Y. Gao, L. Zhu, I. Norton, N.Y.R. Agar, and A. Tannenbaum, Reconstruction and feature selection for desorption electrospray ionization mass spectroscopy imagery, SPIE Medical Imaging, 2014, Note: accepted as oral presentation.
  9. Y. Gao, A. Tannenbaum, and S. Bouix, A framework for joint image-and-shape analysis, SPIE Medical Imaging, 2014, Note: accepted as oral presentation.
  10. Y. Gao, L. Zhu, S. Bouix, and A. Tannenbaum, Interpolation of longitudinal shape and image data via optimal mass transport, SPIE Medical Imaging, 2014, Note: accepted.
  11. Y. Gao and S. Bouix, Synthesis of realistic subcortical anatomy with known surface deformations, in MICCAI Workshop on Mesh Processing in Medical Image Analysis, 2012, pp. 80-88.
  12. W. Wang, Y. Gao, A. Mehrtash, R. Seethmaraju, T. Kapur, A. Vishwanathan, E. Schmidt, and R. Cormack, Real-time catheter tracking and visualization in mr-guided brachytherapy, in AAPM, 2013, note: in press.
  13. T. Riklin-Raviv, Y. Gao, J. Levitt, and S. Bouix, Statistical shape analysis for population studies via level-set based shape morphing, in ECCV Workshop on Non-Rigid Shape Analysis and Deformable Image Alignment, 2012, pp. 42-51.
  14. L. Zhu, Y. Gao, A. Yezzi, R. MacLeod, J. Cates, and A. Tannenbaum, Automatic segmentation of the left atrium from MRI images using salient feature and contour evolution, in IEEE-EMBS, 2012, Note: accepted as oral presentation.
  15. Z. Li, Y. Gao, K.S. Moon, A. Tannenbaum, and C.P. Wong, Nano filler dispersion in polymer composites for electronic packaging, in IEEE 62nd Electronic Components and Technology Conference (ECTC). IEEE, 2012, pp. 1752-1757.
  16. Y. Gao and A. Tannenbaum, Longitudinal 3D morphometry study using the optimal mass transport, in SPIE Medical Imaging, 2012, in press.
  17. Y. Gao and A. Tannenbaum, Combining atlas and active contour for automatic 3D medical image segmentation, in Proceedings of the International Symposium on Biomedical Imaging (ISBI), 2011, pp. 1401-1404.
  18. Y. Gao, A. Tannenbaum, H. Chen, M. Torres, and T. Liu, Skin segmentation algorithm for breast ultrasound images using active contour method: Toward development of ultrasound-based automated-tissue-toxicity-assessment (ATTA) tool in breast-cancer radiotherapy, in Medical Physics, Issue for the American Association of Physicists in Medicine(AAPM), 2011, vol. 38, p. 3698.
  19. L. Zhu, Y. Gao, V. Mohan, A. Stillman, T. Faber., and A. Tannenbaum, Estimation of myocardial volume at risk from CT angiography, in Proceedings of SPIE, 2011, vol. 7963, p. 79632A.
  20. Y. Gao, A. Tannenbaum, and R. Kikinis, Simultaneous multi-object segmentation using local robust statistics and contour interaction, in MICCAI Workshop on Medical Computer Vision, 2010, pp. 195-203.
  21. Y. Gao and A. Tannenbaum, Fast Hamilton-Jacobi equation solver and neural fiber bundle extraction, in SPIE Medical Imaging, 2010, Note: oral presentation.
  22. P.J. Rossi, H. Liu, Y. Gao, H. Chen, E. Butker, E. Yoshida, and T. Liu, Ultrasonic multifeature tissue analysis for the prostate: Implications for monitoring outcome in prostate cancer radiotherapy, in International Journal of Radiation Oncology* Biology* Physics, Issue for the American Society for Therapeutic Radiology and Oncology (ASTRO). 2010, vol. 78, pp. S117-S117, Elsevier.
  23. Y. Gao and A. Tannenbaum, Shape based MRI prostate image segmentation using local information driven directional distance bayesian method, in Proceedings of SPIE, 2010, Note: oral presentation.
  24. Y. Gao and A. Tannenbaum, Image processing and registration in a point set representation, in Proceedings of SPIE, 2010, Note: oral presentation.
  25. Y. Gao, S. Gao, C. Ding, L. Rao, and D. S. Khoury, Semi-automatic segmentation of the endocardial boundary in intracardiac echocardiographic images, in Proceedings of 26th International Conference of the IEEE EMBS, 2004, pp. 1911-1913.
  26. S. George, P. Sharma, Y. Yang, Y. Gao, D. Martin, and D. Giddens, Investigation of geometry and flow in the portal vein using magnetic resonance imaging, in Proceedings of 29th International Conference of the IEEE EMBS, 2007.
  27. Y. Gao and A. Tannenbaum, " Active contour without edges", on parametric manifolds, in SPIE Medical Imaging, 2010.
  28. Y. Gao, B. Gholami, R. MacLeod, J. Blauer, W. Haddad, and A. Tannenbaum, Segmentation of the epicardial wall of the left atrium using statistical shape learning and local curve statistics, in Proceedings of SPIE, 2010.
  29. J. Melonakos, Y. Gao, and A. Tannenbaum, Tissue tracking: applications for brain MRI classification, in Proceedings of SPIE, 2007.

Abstracts, Workshops, and Other Publications

  1. Y. Gao, N. Farhat, N. Agrawal, G. Pernelle, X. Chen, J. Egger, S. Blevins, S. Bouix, A. Tannenbaum, W. Wells, R. Kikinis, E. Schmidt, A. Viswanathan, and T. Kapur, Needle extraction for the intraoperative MR image guided brachytherapy, 5th Image Guided Therapy Workshop, 2012.
  2. J. Egger, N. Agrawal, S. Blevins, N. Farhat, G. Pernelle, X. Chen, Y. Gao, , T. Penzkofer, T. Kapur, and A. Viswanathan, Segmentation of pelvic structures for gynecologic brachytherapy, 5th Image Guided Therapy Workshop, 2012.
  3. T. Riklin-Raviv, Y. Gao, and S. Bouix, Statistical shape analysis with modified Hausdorff distance, in IEEE EMBS, 2012.
  4. R. Sandhu, A. Dominitz, Y. Gao, and A. Tannenbaum, Volumetric mapping of genus zero objects via mass preservation, arxiv.org/abs/1205.1225, 2012.
  5. J. Melonakos, Y. Gao, and A. Tannenbaum, Conformal flattening of brain ventricles, in Poster presented at Memphis BioImaging Symposium 2006, 2006.